...
All centralized astro-software (binaries and source) is placed under /cluster/apps/software /, which should be exported as the environmental variable $SOFTWARE.
#To To use astro-software you should have these lines in your .bashrc# Lines from Bogdan to set-up astro software:
if [ -f
| Code Block |
|---|
if [ -d "/cluster/apps/software/_profile" ]; then if [ -z $SOFTWARE ]; then source "/cluster/apps/software/_profile |
...
/globals.bash" fi fi if [ -d "/cluster/apps/software/.profile.d" ]; then if [ -z $SOFTWARE ]; then source "/cluster/apps/software/ |
...
.profile.d/ |
...
globals.bash" |
...
fi
fi
|
To use it, run first "ml ASTRO" to load the ASTRO workspace. This will set environmental variables required for some tools/programs to run.Note: currently only bash shell is supported (SHELL=/bin/bash).
- Anaconda
Some python packages are installed via anaconda (https://anaconda.cloud/package-categories/scientific). To load it type:
| Code Block |
|---|
[username@computername ~]$ ml |
...
Then to see the available environments type:
$ conda env list
...
anaconda3 ################################################################################# #### Please remember to run "init-conda" to fully setup the environment #### Run "conda env list" to list all the environments #### Load environment "conda activate env_name" where env_name is one from the list #### Remember to run "conda deactivate" before unload/purge anaconda3 #### otherwise you will have to restart your shell to avoid possible issues ################################################################################# [username@computername ~]$ init-conda [username@computername ~]$ conda env list # conda environments: # base /cluster/apps/software/anaconda3/2022.05 |
...
astroconda /cluster/apps/software/anaconda3/2022.05/envs/astroconda |
...
astrosource /cluster/apps/software/anaconda3/2022.05/envs/astrosource |
...
ciao /cluster/apps/software/anaconda3/2022.05/envs/ciao |
...
fermi /cluster/apps/software/anaconda3/2022.05/envs/fermi |
...
iraf /cluster/apps/software/anaconda3/2022.05/envs/iraf |
...
phoebe /cluster/apps/software/anaconda3/2022.05/envs/phoebe posydon /cluster/apps/software/anaconda3/2022.05/envs/posydon python-2.7 /cluster/apps/software/anaconda3/2022.05/envs/python-2.7 |
...
[username@computername ~]$ conda activate astrosource
(astrosource) [username@computername ~]$ |
- heasoft: A Unified Release of the FTOOLS and XANADU Software Packages (https://heasarc.gsfc.nasa.gov/docs/software/heasoft/)
- Description:
- To load it: ml ASTRO heasoft
- Version installed: 6.31 (6.30)
- Acknowledgement:
...
- caldb: HEASARC's calibration database (CALDB) system (https://heasarc.gsfc.nasa.gov/docs/heasarc/caldb/caldb_intro.html)
- Description:
- To load it: TBD ?ml ASTRO CALDB
- Version installed:
- Acknowledgement:
...
- ciao: Chandra Interactive Analysis of Observations (https://cxc.cfa.harvard.edu/ciao/)
- Description: CIAO is the software package developed by the Chandra X-Ray Center for analysing data from the Chandra X-ray Telescope. It can also be used with data from other Astronomical observatories, whether ground or space based.
- To load it: ml anaconda then init-conda then conda activate ciao
or in one line command: ml anaconda3 && sleep 2s && init-conda && conda activate astroconda
or from own module with: ml conda+/ciao - Version installed:
- Acknowledgement:
...
- fermitools: Fermi-LAT Data Analysis Tools (https://fermi.gsfc.nasa.gov/ssc/data/analysis/software/)
- Description:
- To load it: ml anaconda then init-conda then conda activate fermi
or in one line command: ml anaconda3 && sleep 2s && init-conda && conda activate fermi
or from own module with: ml conda+/fermi - Version installed:
- Acknowledgement:
...
- starlink: Starlink Software Collection (https://starlink.eao.hawaii.edu/starlink/2021A)
- Description: The Starlink Software Collection provides access to a large number of Astronomical data reduction, analysis, and visualisation tools.
- To load it: ml starlink
- Version installed: 2021A ?
- Acknowledgement:
- TRM: Tom Marsh's ultracam and molly (and related) software packages (https://cygnus.astro.warwick.ac.uk/phsaap/software/)
- Description: molly: 1D spectrum analysis program. ultracam: aperture photometry pipeline.
- To load it: ml ASTRO trm
- Version installed:
- Acknowledgement: T. Marsh, V. Dhillon, ...
...
- astroconda: Third-party add-on channel to provide easy access to STScI’s software packages (https://astroconda.readthedocs.io/en/latest/#)
- Description: AstroConda is a free Conda channel maintained (until Feb. 2023) by the Space Telescope Science Institute (STScI) in Baltimore, Maryland.
This channel provides tools and utilities required to process and analyze data from the Hubble Space Telescope (HST), James Webb Space Telescope (JWST), and others. - To load it: ml anaconda then init-conda then conda activate astroconda
or in one line command: ml anaconda3 && sleep 2s && init-conda && conda activate astroconda - Version installed:
- Acknowledgement: STScI
- Description: AstroConda is a free Conda channel maintained (until Feb. 2023) by the Space Telescope Science Institute (STScI) in Baltimore, Maryland.
...
- astrosource: Analysis script for sources with variability in their brightness (https://pypi.org/project/astrosource/).
- Description:
- To load it: ml anaconda then init-conda then conda activate astrosource
or in one line command: ml anaconda3 && sleep 2s && init-conda && conda activate astrosource - Version installed:
- Acknowledgement: Fitzgerald et al. (2021)
- iraf: Image Reduction and Analysis Facility (https://iraf-community.github.io/)
- Description:
- To load it: ml ASTRO ds9 iraf; init-iraf
- To set it up (first time only): setup-iraf
- Version installed: 2.17
- Acknowledgement:
- psrcat: ATNF pulsar catalog (https://www.atnf.csiro.au/research/pulsar/psrcat/)
- Description:
- To load it:
- Version installed: $ psrcat -v. Software version: 1.50. Catalogue version number = 1.69
- Acknowledgement: Manchester, R. N., Hobbs, G. B., Teoh, A. & Hobbs, M., Astron. J., 129, 1993-2006 (2005) (astro-ph/0412641)
- ne2001 NE2001 and ymw16: Dispersion measure (pulsar) distance models.
- Description:
- To load it:/start it use NE2001 and ymw16 commands
- Version installed:
- Acknowledgement:
...