2024

• Stiller, Josefin; Feng, Shaohong; Chowdhury, Al-Aabid; Rivas-González, Iker; Duchêne, David A.; Fang, Qi. (2024) Complexity of avian evolution revealed by family-level genomes. Nature
  Vitenskapelig artikkel
• Laine, Jan Tapio; Mak, Sarah S.T.; Martins, Nuno F.G.; Chen, Xihan; Gilbert, Marcus Thomas Pius; Jones, Felicity C.. (2024) Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation. Current Biology
  Vitenskapelig artikkel
• Kothe, Caroline Isabel; Rasmussen, Jacob Agerbo; Mak, Sarah S.T.; Gilbert, Marcus Thomas Pius; Evans, Joshua. (2024) Exploring the microbial diversity of novel misos with metagenomics. Food Microbiology
  Vitenskapelig artikkel
• Sandoval-Velasco, Marcela; Dudchenko, Olga; Rodríguez, Juan Antonio; Pérez Estrada, Cynthia; Dehasque, Marianne; Fontsere, Claudia. (2024) Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample. Cell
  Vitenskapelig artikkel
• Barnes, Christopher J.; Bünner, Maria Sophie; Ramírez-Flores, M. Rosario; Nielsen, Ida Broman; Ramos-Madrigal, Jazmin; Zharikova, Daria. (2024) The ancestral environment of teosinte populations shapes their root microbiome. Environmental Microbiome
  Vitenskapelig artikkel
• Dehasque, Marianne; Morales, Hernán E.; Díez-del-Molino, David; Pečnerová, Patrícia; Chacón-Duque, J. Camilo; Kanellidou, Foteini. (2024) Temporal dynamics of woolly mammoth genome erosion prior to extinction. Cell
  Vitenskapelig artikkel
• Cavill, Emily L.; Morales, Hernán E.; Sun, Xin; Westbury, Michael V.; van Oosterhout, Cock; Accouche, Wilna. (2024) When birds of a feather flock together: Severe genomic erosion and the implications for genetic rescue in an endangered island passerine. Evolutionary Applications
  Vitenskapelig artikkel
• Muurmann, Asmus Toftkær; Banovic, Marija; Gilbert, Marcus Thomas Pius; Sogari, Giovanni; Limborg, Morten Tønsberg; Sicheritz-Pontén, Thomas. (2024) Framework for valorizing waste- and by-products through insects and their microbiomes for food and feed. Food Research International
  Vitenskapelig oversiktsartikkel/review
• Odriozola, Iñaki; Rasmussen, Jacob A.; Gilbert, Marcus Thomas Pius; Limborg, Morten T.; Alberdi, Antton. (2024) A practical introduction to holo-omics. Cell Reports Methods
  Vitenskapelig oversiktsartikkel/review
• Rose, Jennifer; Gilbert, Marcus Thomas Pius; Outerbridge, Mark; Morales, Hernán E.. (2024) Evolutionary genomics analysis reveals a unique lineage of Megachile pruina found in an isolated population in Bermuda. Insect Conservation and Diversity
  Vitenskapelig artikkel
• Sun, Xin; Cavill, Emily Louisa; Margaryan, Ashot; Lin, Jianqing; Thingaard, Søren; Said, Tamrini A.. (2024) A Genomic Exploration of the Possible De-Extirpation of the Zanzibar Leopard. Molecular Ecology
  Vitenskapelig artikkel
• Bordenstein, Seth R.; Gilbert, Marcus Thomas Pius; Ginnan, Nichole; Malacrinò, Antonino; Martino, Maria Elena; Bahrndorf, Simon. (2024) The disciplinary matrix of holobiont biology. Uniting life’s seen and unseen realms guides a conceptual advance in research. Science
  Vitenskapelig artikkel
• Ellegaard, Martin Rene; Ebenesersdóttir, S. Sunna; Moore, Kristjan H.S.; Petersen, Anna Helena; Vågene, Åshild J.; Bieker, Vanessa Carina. (2024) Corroborating written history with ancient DNA: The case of the Well-man described in an Old Norse saga. iScience
  Vitenskapelig artikkel

2023

• Ciucani, Marta Maria; Ramos-Madrigal, Jazmín; Hernández-Alonso, Germán; Carmagnini, Alberto; Aninta, Sabhrina Gita; Sun, Xin. (2023) The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs. iScience
  Vitenskapelig artikkel
• Germain, Ryan R.; Feng, Shaohong; Chen, Guangji; Graves, Gary R.; Tobias, Joseph A.; Rahbek, Carsten. (2023) Species-specific traits mediate avian demographic responses under past climate change. Nature Ecology and Evolution
  Vitenskapelig artikkel
• Díez-del-Molino, David; Dehasque, Marianne; Chacón-Duque, J. Camilo; Pečnerová, Patrícia; Tikhonov, Alexei; Protopopov, Albert. (2023) Genomics of adaptive evolution in the woolly mammoth. Current Biology
  Vitenskapelig artikkel
• Germain, Ryan R.; Feng, Shaohong; Buffan, Lucas; Carmona, Carlos P.; Chen, Guangii; Graves, Gary R.. (2023) Changes in the functional diversity of modern bird species over the last million years. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig artikkel
• Rodriguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdottir, Sunna; Kilinc, Gulsah; Kjellström, Anna; Papmehl-Dufay, Ludvig. (2023) The genetic history of Scandinavia from the Roman Iron Age to the present. Cell
  Vitenskapelig artikkel
• Aizpurua, Ostaizka; Blijleven, Kees; Trivedi, Urvish; Gilbert, Marcus Thomas Pius; Alberdi, Antton. (2023) Unravelling animal–microbiota evolution on a chip. Trends in Microbiology
  Vitenskapelig oversiktsartikkel/review
• Sun, Xin; Liu, Yue-Chen; Tiunov, Mikhail P.; Gimranov, Dmitry O.; Zhuang, Yan; Han, Yu. (2023) Ancient DNA reveals genetic admixture in China during tiger evolution. Nature Ecology and Evolution
  Vitenskapelig artikkel
• Sandoval-Velasco, Marcela; Jagadeesan, Anuradha; Ramos-Madrigal, Jazmín; Ávila-Arcos, María C.; Fortes-Lima, Cesar A.; Watson, Judy. (2023) The ancestry and geographical origins of St Helena's liberated Africans. American Journal of Human Genetics
  Vitenskapelig artikkel
• Aizpurua, Ostaizka; Dunn, Robert R.; Hansen, Lars H.; Gilbert, Marcus Thomas Pius; Alberdi, Antton. (2023) Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data. Critical Reviews in Biotechnology
  Vitenskapelig oversiktsartikkel/review
• Sánchez-Barreiro, Fátima; De Cahsan, Binia; Westbury, Michael V.; Sun, Xin; Margaryan, Ashot; Fontsere, Claudia. (2023) Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros. Molecular Biology and Evolution (MBE)
  Vitenskapelig artikkel
• Danabalan, Renita; Merkel, Kevin; Bærholm Schnell, Ida; Arandjelovic, Mimi; Boesch, Christophe; Brazzola, Gregory. (2023) Mammal mitogenomics from invertebrate-derived DNA. Environmental DNA
  Vitenskapelig artikkel
• Hansen, Søren B.; Bozzi, Davide; Mak, Sarah S.T.; Clausen, Cecilie G.; Nielsen, Tue K.; Kodama, Miyako. (2023) Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition. Genomics
  Vitenskapelig artikkel
• Cohen, Pnina; Bacilieri, Roberto; Ramos-Madrigal, Jazmín; Privman, Eyal; Boaretto, Elisabetta; Weber, Audrey. (2023) Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig artikkel
• Rasmussen, Jacob A.; Kiilerich, Pia; Madhun, Abdullah Sami; Waagbø, Rune; Lock, Erik Jan Robert; Madsen, Lise. (2023) Co-diversification of an intestinal Mycoplasma and its salmonid host. The ISME Journal
  Vitenskapelig artikkel
• Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul Ragnar; Bleidorn, Christoph. (2023) How genomics can help biodiversity conservation. Trends in Genetics
  Vitenskapelig oversiktsartikkel/review
• Hernández-Alonso, Germán; Ramos-Madrigal, Jazmín; Sun, Xin; Scharff-Olsen, Camilla Hjorth; Sinding, Mikkel Holger Strander; Martins, Nuno F.. (2023) Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing. Ecology and Evolution
  Vitenskapelig artikkel
• Skovrind, Mikkel; Pacheco, George; Christensen, Emil Aputsiaq Flindt; Gopalakrishnan, Shyam; Fietz, Katharina; Holm-Hansen, Tore Hejl. (2023) Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region. Fisheries Research
  Vitenskapelig artikkel
• Bergeron, Lucie A.; Besenbacher, Søren; Zheng, Jiao; Li, Panyi; Bertelsen, Mads Frost; Quintard, Benoit. (2023) Evolution of the germline mutation rate across vertebrates. Nature
  Vitenskapelig artikkel
• Rasmussen, Linett; Fontsere, Claudia; Soto-Calderón, Iván D.; Guillen, Rosamira; Savage, Anne; Hansen, Anders Johannes. (2023) Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact. Molecular Ecology
  Vitenskapelig artikkel
• Hansen, Charles Christian Riis; Láruson, Áki Jarl; Rasmussen, Jacob Agerbo; Chimal Ballesteros, Jesus Adrian; Sinding, Mikkel Holger Strander; Hallgrimsson, Gunnar T.. (2023) Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla). Molecular Ecology
  Vitenskapelig artikkel
• Zhang, Pei; Zhu, Yuanzhen; Guo, Qunfei; Li, Ji; Zhan, Xiaoyu; Yu, Hao. (2023) On the origin and evolution of RNA editing in metazoans. Cell reports
  Vitenskapelig artikkel
• Bolt Botnen, Amanda; Bjørnsen, Mads Bjørn; Alberdi, Antton; Gilbert, Marcus Thomas Pius; Aizpurua, Ostaizka. (2023) A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies. Heliyon
  Vitenskapelig artikkel
• Hernández-Alonso, Germán; Ramos-Madrigal, Jazmín; van Grouw, Hein; Ciucani, MartaMaria; Cavill, Emily Louisa; Sinding, Mikkel-Holger S.. (2023) Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences. Molecular Biology and Evolution (MBE)
  Vitenskapelig artikkel
• Femerling, Georgette; van Oosterhout, Cock; Feng, Shaohong; Bristol, Rachel M.; Zhang, Guojie; Groombridge, Jim. (2023) Genetic Load and Adaptive Potential of a Recovered Avian Species that Narrowly Avoided Extinction. Molecular Biology and Evolution (MBE)
  Vitenskapelig artikkel
• Pereira, Cátia Lúcio; Ersoy, Zeynep; Gilbert, Marcus Thomas Pius; Gravel, Dominique; Araújo, Miguel B.; Matias, Miguel Graça. (2023) Future-proofing environmental DNA and trait-based predictions of food webs. BioScience
  Vitenskapelig artikkel

2022

• Neves, Ricardo A. Cardoso; Møbjerg, Ask; Kodama, Miyako; Ramos-Madrigal, Jazmín; Gilbert, Marcus Thomas Pius; Møbjerg, Nadja. (2022) Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome. Comparative Biochemistry and Physiology A
  Vitenskapelig artikkel
• Rasmussen, Jacob Agerbo; Villumsen, Kasper Rømer; Ernst, Madeleine; Hansen, Martin; Forberg, Torunn; Gopalakrishnan, Shyam. (2022) A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss). Microbiome
  Vitenskapelig artikkel
• Jensen, Evelyn L.; Díez-del-Molino, David; Gilbert, Marcus Thomas Pius; Bertola, Laura D.; Borges, Filipa; Cubric-Curik, Vlatka. (2022) Ancient and historical DNA in conservation policy. Trends in Ecology & Evolution
  Vitenskapelig oversiktsartikkel/review
• Lewin, Harris A.; Richards, Stephen; Aiden, Erez Lieberman; Allende, Miguel L.; Archibald, John M.; Bálint, Miklós. (2022) The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig oversiktsartikkel/review
• Bergström, Anders; Stanton, David W. G.; Taron, Ulrike H.; Frantz, Laurent; Sinding, Mikkel Holger Strander; Ersmark, Erik. (2022) Grey wolf genomic history reveals a dual ancestry of dogs. Nature
  Vitenskapelig artikkel
• Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre. (2022) The population genomic legacy of the second plague pandemic. Current Biology
  Vitenskapelig artikkel
• Field, Matt A.; Yadav, Sonu; Dudchenko, Olga; Esvaran, Meera; Rosen, Benjamin D.; Skvortsova, Ksenia. (2022) The Australian dingo is an early offshoot of modern breed dogs. Science Advances
  Vitenskapelig artikkel
• Lin, Jianqing; Duchêne, David; Carøe, Christian; Smith, Oliver; Ciucani, Marta Maria; Niemann, Jonas. (2022) Probing the genomic limits of de-extinction in the Christmas Island rat. Current Biology
  Vitenskapelig artikkel
• Cerca, José; Petersen, Bent; Lazaro-Guevara, José Miguel; Rivera-Colón, Angel G.; Birkeland, Siri; Vizueta, Joel. (2022) The genomic basis of the plant island syndrome in Darwin’s giant daisies. Nature Communications
  Vitenskapelig artikkel
• de Ferran, Vera; Figueiró, Henrique Vieira; de Jesus Trindade, Fernanda; Smith, Oliver; Sinding, Mikkel Holger Strander; Trinca, Cristine S.. (2022) Phylogenomics of the world's otters. Current Biology
  Vitenskapelig artikkel
• Koziol, Adam; Odriozola, Iñaki; Nyholm, Lasse; Leonard, Aoife; San José, Carlos; Pauperio, Joana. (2022) Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals. MicrobiologyOpen
  Vitenskapelig artikkel
• Cole, Theresa L.; Zhou, Chengran; Fang, Miaoquan; Pan, Hailin; Ksepka, Daniel T.; Fiddaman, Steven R.. (2022) Genomic insights into the secondary aquatic transition of penguins. Nature Communications
  Vitenskapelig artikkel
• Patrono, Livia V.; Vrancken, Bram; Budt, Matthias; Düx, Ariane; Lequime, Sebastian; Boral, Sengül. (2022) Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic. Nature Communications
  Vitenskapelig artikkel
• Møbjerg, Ask; Kodama, Miyako; Ramos-Madrigal, Jazmín; Neves, Ricardo A. Cardoso; Jørgensen, Aslak; Schiøtt, Morten. (2022) Corrigendum to “Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription” [Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 271 (2022), 111245] (Comparative Biochemistry and Physiology, Part A (2022) 271, (S1095643322001039), (10.1016/j.cbpa.2022.111245)). Comparative Biochemistry and Physiology A
  Errata
• Neves, Ricardo A. Cardoso; Møbjerg, Ask; Kodama, Miyako; Ramos-Madrigal, Jazmín; Gilbert, Marcus Thomas Pius; Møbjerg, Nadja. (2022) Corrigendum to “Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome” [Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 267 (2022), 111169] (Comparative Biochemistry and Physiology, Part A (2022) 267, (S1095643322000277), (10.1016/j.cbpa.2022.111169)). Comparative Biochemistry and Physiology A
  Errata
• Tous, Núria; Marcos, Sofia; Goodarzi Boroojeni, Farshad; Pérez de Rozas, Ana; Zentek, Jürgen; Estonba, Andone. (2022) Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics. Frontiers in Physiology
  Vitenskapelig artikkel
• Sun, Xin; Ciucani, Marta Maria; Rasmussen, Jacob Agerbo; Gilbert, Marcus Thomas Pius; Sinding, Mikkel Holger Strander. (2022) Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species. BMC Ecology and Evolution
  Vitenskapelig artikkel
• Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph. (2022) The era of reference genomes in conservation genomics. Trends in Ecology & Evolution
  Vitenskapelig oversiktsartikkel/review
• Møbjerg, Ask; Kodama, Miyako; Ramos-Madrigal, Jazmín; Neves, Ricardo A. Cardoso; Jørgensen, Aslak; Schiøtt, Morten. (2022) Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription. Comparative Biochemistry and Physiology A
  Vitenskapelig artikkel
• Bieker, Vanessa Carina; Battlay, Paul; Petersen, Bent; Sun, Xin; Wilson, Jonathan; Brealey, Jaelle C.. (2022) Uncovering the genomic basis of an extraordinary plant invasion. Science Advances
  Vitenskapelig artikkel

2021

• Niemann, Jonas; Gopalakrishnan, Shyam; Yamaguchi, Nobuyuki; Ramos-Madrigal, Jazmín; Wales, Nathan; Gilbert, Marcus Thomas Pius. (2021) Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū. iScience
  Vitenskapelig artikkel
• Rasmussen, Jacob A.; Villumsen, Kasper Rømer; Duchêne, David; Puetz, Lara; Delmont, Tom; Sveier, Harald. (2021) Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. Communications Biology
  Vitenskapelig artikkel
• Agerbo Rasmussen, Jacob; Nielsen, Martin; Mak, Sarah Siu Tze; Döring, Johanna; Klincke, Franziska; Gopalakrishnan, Shyam. (2021) eDNA-based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity. Environmental DNA
  Vitenskapelig artikkel
• Liu, Shanlin; Westbury, Michael V; Dussex, Nicolas; Mitchell, Kieren J.; Sinding, Mikkel-Holger S.; Heintzman, Peter D.. (2021) Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell
  Vitenskapelig artikkel
• von Seth, Johanna; Dussex, Nicolas; Díez-del-Molino, David; van der Valk, Tom; Kutschera, Verena E.; Kierczak, Marcin. (2021) Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations. Nature Communications
  Vitenskapelig artikkel
• Liu, Chang; Gao, Jianbo; Cui, Xinxin; Li, Zhipeng; Chen, Lei; Yuan, Yuan. (2021) A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe. Science Advances
  Vitenskapelig artikkel
• Lynggaard, Christina; Oceguera-Figueroa, Alejandro; Kvist, Sebastian; Gilbert, Marcus Thomas Pius; Bohmann, Kristine. (2021) The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation. Molecular Ecology Resources
  Vitenskapelig artikkel
• Pereira, Cátia Lúcio; Gilbert, Marcus Thomas Pius; Araújo, Miguel B.; Matias, Miguel Graça. (2021) Fine-tuning biodiversity assessments: A framework to pair eDNA metabarcoding and morphological approaches. Methods in Ecology and Evolution
  Vitenskapelig artikkel
• Cavill, Emily L.; Gopalakrishnan, Shyam; Puetz, Lara C.; Ribeiro, Ângela M.; Mak, Sarah S. T.; da Fonseca, Rute R.. (2021) Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird. IBIS
  Vitenskapelig artikkel
• Foote, Andrew; Hooper, Rebecca; Alexander, Alana; Baird, Robin; Baker, Charles Scott; Ballance, Lisa. (2021) Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology
  Vitenskapelig artikkel
• Andrade, Pedro; Gazda, Małgorzata A.; Araújo, Pedro M.; Afonso, Sandra; Rasmussen, Jacob A.; Marques, Cristiana I.. (2021) Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates. PLoS Genetics
  Vitenskapelig artikkel
• Perri, Angela; Mitchell, Kieren J.; Mouton, Alice; Álvarez-Carretero, Sandra; Hulme-Beaman, Ardern; Haile, James. (2021) Dire wolves were the last of an ancient New World canid lineage. Nature
  Vitenskapelig artikkel
• Ciucani, Marta M.; Jensen, Julie Kragmose; Sinding, Mikkel-Holger S.; Smith, Oliver; Lucenti, Saverio Bartolini; Rosengren, Erika. (2021) Evolutionary history of the extinct Sardinian dhole. Current Biology
  Vitenskapelig artikkel
• Sinding, Mikkel-Holger S.; Ciucani, Marta M.; Ramos-Madrigal, Jazmín; Carmagnini, Alberto; Rasmussen, Jacob A.; Feng, Shaohong. (2021) Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos. iScience
  Vitenskapelig artikkel
• Cavill, Emily; Liu, Shanlin; Zhou, Xin; Gilbert, Marcus Thomas Pius. (2021) To bee, or not to bee? One leg is the question. Molecular Ecology Resources
  Vitenskapelig artikkel
• Sirén, Kimmo; Millard, Andrew; Petersen, Bent; Gilbert, Marcus Thomas Pius; Clokie, Martha R.J.; Sicheritz-Pontén, Thomas. (2021) Rapid discovery of novel prophages using biological feature engineering and machine learning. NAR Genomics and Bioinformatics
  Vitenskapelig artikkel
• Poliseno, Angelo; Altuna, Alvaro; Puetz, Lara; Mak, Sarah Siu Tze; Ríos, Pilar; Petroni, Emily. (2021) An integrated morphological-molecular approach reveals new insights on the systematics of the octocoral Telestula humilis (Thomson, 1927) (Octocorallia: Alcyonacea: Clavulariidae). Invertebrate systematics
  Vitenskapelig artikkel
• Stenøien, Hans K.; Sun, Xin; Martin, Michael David; Scharff-Olsen, Camilla Hjorth; Alonso, Germán Hernàndez; Martins, Nuno Filipe Gomes. (2021) Genetisk opphav til den norsksvenske ulvestammen (Canis lupus lupus). NTNU Vitenskapsmuseet naturhistorisk rapport (11)
  Rapport
• Westbury, Michael V; Barnett, Ross; Sandoval-Velasco, Marcela; Gower, Graham; Vieira, Filipe G.; de Manuel, Marc. (2021) A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives. Open Research Europe
  Vitenskapelig artikkel
• Feuerborn, Tatiana R.; Carmagnini, Alberto; Losey, Robert J.; Nomokonova, Tatiana; Askeyev, Arthur; Askeyev, Igor. (2021) Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig artikkel
• Sinding, Mikkel-Holger S.; Gopalakrishnan, Shyam; Raundrup, Katrine; Dalén, Love; Threlfall, Jonathan; Gilbert, Marcus Thomas Pius. (2021) The genome sequence of the grey wolf, Canis lupus Linnaeus 1758. Wellcome Open Research
  Vitenskapelig artikkel
• Fromm, Bastian; Tarbier, Marcel; Smith, Oliver; Mármol-Sánchez, Emilio; Dalén, Love; Gilbert, Marcus Thomas Pius. (2021) Ancient microRNA profiles of 14,300-yr-old canid samples confirm taxonomic origin and provide glimpses into tissue-specific gene regulation from the Pleistocene. RNA: A publication of the RNA Society
  Vitenskapelig artikkel
• Sánchez-Barreiro, Fátima; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmín; Westbury, Michael V.; de Manuel, Marc; Margaryan, Ashot. (2021) Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Molecular Ecology
  Vitenskapelig artikkel
• Piñeiro, Rosalía; Hardy, Olivier J.; Tovar, Carolina; Gopalakrishnan, Shyam; Vieira, Filipe Garrett; Gilbert, Marcus Thomas Pius. (2021) Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig artikkel
• Alfano, Niccolò; Dayaram, Anisha; Axtner, Jan; Tsangaras, Kyriakos; Kampmann, Marie-Louise; Mohamed, Azlan. (2021) Non-invasive surveys of mammalian viruses using environmental DNA. Methods in Ecology and Evolution
  Vitenskapelig artikkel
• Rhie, Arang; McCarthy, Shane A.; Fedrigo, Olivier; Damas, Joana; Formenti, Giulio; Koren, Sergey. (2021) Towards complete and error-free genome assemblies of all vertebrate species. Nature
  Vitenskapelig artikkel
• Azevedo-Silva, D.; Rasmussen, J.A.; Carneiro, M.; Gilbert, Marcus Thomas Pius; Azevedo, H.. (2021) Feasibility of applying shotgun metagenomic analyses to grapevine leaf, rhizosphere and soil microbiome characterisation. Australian journal of grape and wine research
  Vitenskapelig artikkel
• Margaryan, Ashot; Noer, Christina Lehmkuhl; Richter, Stine R.; Restrup, Marlene Elise; Bülow-Hansen, Julie Lee; Leerhøi, Frederik. (2021) Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark. Environmental DNA
  Vitenskapelig artikkel
• Bogaard, Amy; Allaby, Robin G.; Arbuckle, Benjamin; Bendrey, Robin; Crowley, Sarah; Cucchi, Thomas. (2021) Reconsidering domestication from a process archaeology perspective. World archaeology
  Vitenskapelig artikkel
• Foote, Andrew; Gilbert, Marcus Thomas Pius; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael David; Morin, Phillip A.. (2021) Evidence of long-term purging of mutation load in killer whale genomes. bioRxiv
  Vitenskapelig artikkel
• Alberdi, Antton; Andersen, Sandra B.; Limborg, Morten T.; Dunn, Robert R.; Gilbert, M. Thomas P.. (2021) Disentangling host–microbiota complexity through hologenomics. Nature reviews genetics
  Vitenskapelig oversiktsartikkel/review
• Fontsere, Claudia; Frandsen, Peter; Hernandez-Rodriguez, Jessica; Niemann, Jonas; Scharff-Olsen, Camilla Hjorth; Vallet, Dominique. (2021) The genetic impact of an Ebola outbreak on a wild gorilla population. BMC Genomics
  Vitenskapelig artikkel
• Bergeron, Lucie A.; Besenbacher, Søren; Bakker, Jaco; Zheng, Jiao; Li, Panyi; Pacheco, George. (2021) The germline mutational process in rhesus macaque and its implications for phylogenetic dating. GigaScience
  Vitenskapelig artikkel
• Kirch, Melanie; Romundset, Anders; Gilbert, Marcus Thomas Pius; Jones, Felicity C.; Foote, Andrew. (2021) Ancient and modern stickleback genomes reveal the demographic constraints on adaptation. Current Biology
  Vitenskapelig artikkel
• Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart. (2021) Author Correction: Dense sampling of bird diversity increases power of comparative genomics (Nature, (2020), 587, 7833, (252-257), 10.1038/s41586-020-2873-9). Nature
  Errata
• Aizpurua, Ostaizka; Nyholm, Lasse; Morris, Evie; Chaverri, Gloriana; Herrera Montalvo, L. Gerardo; Flores-Martinez, José Juan. (2021) The role of the gut microbiota in the dietary niche expansion of fishing bats. Animal Microbiome
  Vitenskapelig artikkel

2020

• Eriksen, Anne Marie Høier; Matthiesen, Henning; Kontopoulos, Ioannis; Gregory, David John; Snoeck, Christophe; Zhang, Guojie. (2020) Rapid loss of endogenous DNA in pig bone buried in five different environments. Archaeometry
  Vitenskapelig oversiktsartikkel/review
• Drinkwater, Rosie; Jucker, Tommaso; Potter, Joshua H. T.; Swinfield, Tom; Coomes, D; Slade, Eleanor M.. (2020) Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats. Molecular Ecology
  Vitenskapelig artikkel
• Barnett, Ross; Westbury, Michael V; Sandoval-Velasco, Marcela; Vieira, Filipe G.; Jeon, Sungwon; Zazula, Grant. (2020) Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens. Current Biology
  Vitenskapelig artikkel
• Fordham, Damien A.; Jackson, Stephen T.; Brown, Stuart C.; Huntley, Brian; Brook, Barry W.; Dahl-Jensen, Dorthe. (2020) Using paleo-archives to safeguard biodiversity under climate change. Science
  Vitenskapelig oversiktsartikkel/review
• Da Fonseca, Rute R.; Couto, Alvarina; Machado, Andre M; Brejova, Brona; Albertin, Carolin B; Silva, Filipe. (2020) A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience
  Vitenskapelig artikkel
• Sinding, Mikkel Holger Strander; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmín; de Manuel, Marc; Pitulko, Vladimir V.; Kuderna, Lukas. (2020) Arctic-adapted dogs emerged at the Pleistocene–Holocene transition. Science
  Vitenskapelig artikkel
• Lord, Edana; Dussex, Nicolas; Kierczak, Marcin; Díez-del-Molino, David; Ryder, Oliver A.; Stanton, David W. G.. (2020) Pre-extinction demographic stability and genomic signatures of adaptation in the woolly rhinoceros. Current Biology
  Vitenskapelig artikkel
• de Manuel, Marc; Barnett, Ross; Sandoval-Velasco, Marcela; Yamaguchi, Nobuyuki; Vieira, Filipe G.; Lisandra Zepeda Mendoza, Zepeda. (2020) The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig oversiktsartikkel/review
• Alberdi, Antton; Razgour, Orly; Aizpurua, Ostaizka; Novella-Fernandez, Roberto; Aihartza, Joxerra; Budinski, Ivana. (2020) DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats. Nature Communications
  Vitenskapelig artikkel
• van Dorp, Lucy; Gelabert, Pere; Rieux, Adrien; De Manuel, Marc; De-Dios, Toni; Gopalakrishnan, Shyam. (2020) Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain. Molecular Biology and Evolution (MBE)
  Vitenskapelig artikkel
• Fotakis, Anna K.; Denham, Sean Dexter; Mackie, Meaghan; Orbegozo, Miren Iraeta; Mylopotamitaki, Dorothea; Gopalakrishnan, Shyam. (2020) Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus. Philosophical Transactions of the Royal Society of London. Biological Sciences
  Vitenskapelig artikkel
• Møller, Henrik Devitt; Ramos-Madrigal, Jazmín; Prada-Luengo, Iñigo; Gilbert, Marcus Thomas Pius; Regenberg, Birgitte. (2020) Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome. Genome Biology and Evolution (GBE)
  Vitenskapelig artikkel
• Margaryan, Ashot; Lawson, Daniel J.; Sikora, Martin; Racimo, Fernando; Rasmussen, Simon; Moltke, Ida. (2020) Population genomics of the Viking world. Nature
  Vitenskapelig artikkel
• Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart. (2020) Dense sampling of bird diversity increases power of comparative genomics. Nature
  Vitenskapelig artikkel
• Eriksen, Anne Marie Høier; Rocha, Carolina; Puetz, Lara; Nielsen, Tue K.; Hansen, Lars H.; Gilbert, Marcus Thomas Pius. (2020) Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling. Science and Technology of Archaeological Research
  Vitenskapelig artikkel
• Vieira, Filipe Garrett; Castruita, Jose A. Samaniego; Gilbert, Marcus Thomas Pius. (2020) Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction. Ecology and Evolution
  Vitenskapelig artikkel
• Gelabert, Pere; Sandoval-Velasco, Marcela; Serres, Aitor; de Manuel, Marc; Renom, Pere; Margaryan, Ashot. (2020) Evolutionary history, genomic adaptation to toxic diet, and extinction of the Carolina parakeet. Current Biology
  Vitenskapelig artikkel
• Nyholm, Lasse; Koziol, Adam; Marcos, Sofia; Botnen, Amanda Bolt; Aizpurua, Ostaizka; Gopalakrishnan, Shyam. (2020) Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research. iScience
  Vitenskapelig oversiktsartikkel/review
• Eriksen, Anne Marie Høier; Nielsen, Tue Kjærgaard; Matthiesen, Henning; Carøe, Christian; Hansen, Lars Hestbjerg; Gregory, David John. (2020) Bone biodeterioration—The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community. PLOS ONE
  Vitenskapelig artikkel
• Bohmann, Kristine; Mirarab, Siavash; Bafna, Vineet; Gilbert, Marcus Thomas Pius. (2020) Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification. Molecular Ecology
  Vitenskapelig artikkel
• Lynggaard, Christina; Yu, Douglas W.; Oliveira, Guilherme; Caldeira, Cecilio F.; Ramos, Silvio J.; Ellegaard, Martin. (2020) DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites. Frontiers in Ecology and Evolution
  Vitenskapelig artikkel
• Pacheco, George; Van Grouw, Hein; Shapiro, Michael D.; Gilbert, Marcus Thomas Pius; Vieira, Filipe G.. (2020) Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds. Genome Biology and Evolution (GBE)
  Vitenskapelig artikkel
• Ramos-Madrigal, Jazmín; Sinding, Mikkel Holger Strander; Carøe, Christian; Mak, Sarah Siu Tze; Niemann, Jonas; Samaniego Castruita, José A.. (2020) Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages. Current Biology
  Vitenskapelig artikkel
• Pan, Hailin; Cole, Theresa L; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; Yang, Zhengtao. (2020) Erratum: High-coverage genomes to elucidate the evolution of penguins (GigaScience (2019) 8:9 (giz117) DOI: 10.1093/gigascience/giz117). GigaScience
  Errata
• Frantz, Laurent A.F.; Haile, James; Lin, Audrey T.; Scheu, Amelie; Geörg, Christina; Benecke, Norbert. (2020) Erratum: Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe (Proceedings of the National Academy of Sciences of the United States of America (2019) 116 (17231-17238) DOI: 10.1073/pnas.1901169116). Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Errata
• Margaryan, Ashot; Sinding, Mikkel Holger Strander; Shanlin, Liu; Vieira, Filipe Garrett; Chan, Yvonne L.; Nathan, Senthilvel K.S.S.. (2020) Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros. Zoological Journal of the Linnean Society
  Vitenskapelig artikkel
• Sandoval-Velasco, Marcela; Rodriguez, Juan Antonio; Estrada, Cynthia Perez; Zhang, Guojie; Aiden, Erez Lieberman; Marti-Renom, Marc A.. (2020) Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform. GigaScience
  Vitenskapelig artikkel

2019

• Wales, Nathan; Akman, Melis; Watson, Ray H B; Sánchez Barreiro, Fatima; Smith, Bruce D; Gremillion, Kristen J. (2019) Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement. Evolutionary Applications
  Vitenskapelig artikkel
• Sirén, Kimmo; Mak, Sarah Siu Tze; Fischer, Ulrich; Hansen, Lars Hestbjerg; Gilbert, Marcus Thomas Pius. (2019) Multi-omics and potential applications in wine production. Current Opinion in Biotechnology
  Vitenskapelig artikkel
• Jensen, Theis Zetner Trolle; Niemann, Jonas; Iversen, Katrine Højholt; Fotakis, Anna K.; Gopalakrishnan, Shyam; Vågene, Åshild J. (2019) A 5700 year-old human genome and oral microbiome from chewed birch pitch. Nature Communications
  Vitenskapelig artikkel
• Frantz, Laurent A.F.; Haile, James; Lin, Audrey T.; Scheu, Amelie; Geörg, Christina; Benecke, Norbert. (2019) Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig artikkel
• Pan, Hailin; Cole, Theresa L.; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; Yang, Zhengtao. (2019) High-coverage genomes to elucidate the evolution of penguins. GigaScience
  Vitenskapelig artikkel
• Chen, Lei; Qiu, Qiang; Jiang, Yu; Wang, Kun; Lin, Zeshan; Li, Zhipeng. (2019) Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science
  Vitenskapelig artikkel
• Thomas, Jessica E.; Carvalho, Gary R.; Haile, James; Rawlence, Nicolas J.; Martin, Michael David; Ho, Simon Y.W.. (2019) Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. eLIFE
  Vitenskapelig artikkel
• Rey-Iglesia, Alba; Gopalakrishan, Shyam; Carøe, Christian; Alquezar-Planas, David E.; Ahlmann Nielsen, Anne; Röder, Timo. (2019) MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. Molecular Ecology Resources
  Vitenskapelig artikkel
• Kieler, Ida Nordang; Osto, Melania; Hugentobler, Leoni; Puetz, Lara; Gilbert, Marcus Thomas Pius; Hansen, Torben. (2019) Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria. Scientific Reports
  Vitenskapelig artikkel
• Knapp, Michael; Thomas, Jessica E; Haile, James; Prost, Stefan; Ho, Simon YW; Dussex, Nicolas. (2019) Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa. Molecular Phylogenetics and Evolution
  Vitenskapelig artikkel
• Alves, Joel M.; Carneiro, Miguel; Cheng, Jade Y.; de Matos, Ana Lemos; Rahman, Masmudur M.; Loog, Liisa. (2019) Parallel adaptation of rabbit populations to myxoma virus. Science
  Vitenskapelig artikkel
• De-Dios, Toni; van Dorp, Lucy; Gelabert, Pere; Carøe, Christian; Sandoval-Velasco, Marcela; Fregel, Rosa. (2019) Genetic affinities of an eradicated european plasmodium falciparum strain. Microbial Genomics
  Vitenskapelig artikkel
• Foote, Andrew D.; Martin, Michael David; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger. (2019) Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology
  Vitenskapelig artikkel
• Lin, Zeshan; Chen, Lei; Chen, Xianqing; Zhong, Yingbin; Yang, Yue; Xia, Wenhao. (2019) Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus). Science
  Vitenskapelig artikkel
• Smith, Oliver; Dunshea, Glenn; Sinding, Mikkel-Holger; Fedorov, Sergey; Germonpre, Mietje; Bocherens, Hervé. (2019) Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival. PLoS Biology
  Vitenskapelig artikkel
• Sarmashghi, Shahab; Bohmann, Kristine; Gilbert, Marcus Thomas Pius; Bafna, Vineet; Mirarab, Siavash. (2019) Skmer: assembly-free and alignment-free sample identification using genome skims. Genome Biology
  Vitenskapelig artikkel
• Alberdi, Antton; Gilbert, Marcus Thomas Pius. (2019) A guide to the application of Hill numbers to DNA-based diversity analyses. Molecular Ecology Resources
  Vitenskapelig oversiktsartikkel/review
• Cappellini, Enrico; Welker, Frido; Pandolfi, Luca; Ramos-Madrigal, Jazmín; Samodova, Diana; Rüther, Patrick L.. (2019) Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny. Nature
  Vitenskapelig artikkel
• Jones, Rhys; Velasco, Marcela Sandoval; Harris, Llinos G; Morgan, Sue; Temple, Mark; Ruddy, Michael C. (2019) Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies. Tuberculosis
  Vitenskapelig artikkel
• Feng, Shaohong; Fang, Qi; Barnett, Ross; Li, Caí; Han, Sojung; Kuhlwilm, Martin. (2019) The Genomic Footprints of the Fall and Recovery of the Crested Ibis. Current Biology
  Vitenskapelig artikkel
• Loog, Liisa; Thalmann, Olaf; Sinding, Mikkel Holger Strander; Schuenemann, Verena J.; Perri, Angela; Germonpré, Mietje. (2019) Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology
  Vitenskapelig artikkel
• Ramos-Madrigal, Jazmín; Runge, Anne Kathrine Wiborg; Bouby, Laurent; Lacombe, Thierry; Samaniego Castruita, José Alfredo; Adam-Blondon, Anne-Francoise. (2019) Palaeogenomic insights into the origins of French grapevine diversity. Nature Plants
  Vitenskapelig artikkel
• Ameen, Carly; Feuerborn, Tatiana R.; Brown, Sarah K.; Linderholm, Anna; Hulme-Beaman, Ardern; Lebrasseur, Ophélie. (2019) Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic. Proceedings of the Royal Society of London. Biological Sciences
  Vitenskapelig artikkel
• Sirén, Kimmo; Mak, Sarah Siu Tze; Melkonian, Chrats; Carøe, Christian; Swiegers, Jan Hendrik; Molenaar, Douwe. (2019) Taxonomic and functional characterization of the microbial community during spontaneous in vitro fermentation of riesling must. Frontiers in Microbiology
  Vitenskapelig artikkel
• Ribeiro, Angela; Puetz, Lara; Pattinson, Nicholas B; Dalén, Love; Deng, Yuan; Zhang, Guojie. (2019) 31° South: The physiology of adaptation to arid conditions in a passerine bird. Molecular Ecology
  Vitenskapelig artikkel
• Nielsen, Martin; Gilbert, Marcus Thomas Pius; Pape, Thomas; Bohmann, Kristine. (2019) A simplified DNA extraction protocol for unsorted bulk arthropod samples that maintains exoskeletal integrity. Environmental DNA
  Vitenskapelig artikkel
• Ribeiro, Ângela M; Smit, Ben; Gilbert, Marcus Thomas Pius. (2019) 31° South: Dietary niche of an arid-zone endemic passerine. Environmental DNA
  Vitenskapelig artikkel

2018

• Kodama, Miyako; Brinch-Pedersen, Henrik; Sharma, Shrikant; Holme, Inger B.; Joernsgaard, Bjarne; Dzhanfezova, Tsaneta. (2018) Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq. BMC Genomics
  Vitenskapelig artikkel
• Drinkwater, Rosie; Schnell, Ida Bærholm; Bohmann, Kristine; Bernard, Henry; Veron, Géraldine; Clare, Elizabeth. (2018) Using metabarcoding to compare the suitability of two blood‐feeding leech species for sampling mammalian diversity in North Borneo. Molecular Ecology Resources
  Vitenskapelig artikkel
• Schnell, Ida Bærholm; Bohmann, Kristine; Schultze, Sebastian E.; Richter, Stine R.; Murray, Daíthí C.; Sinding, Mikkel-Holger. (2018) Debugging diversity–a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool. Molecular Ecology Resources
  Vitenskapelig artikkel
• Zepeda Mendoza, M. Lisandra; Xiong, Zijun; Escalera-Zamudio, Marina; Runge, Anne Kathrine; Théze, Julien; Streicker, Daniel. (2018) Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature Ecology and Evolution
  Vitenskapelig artikkel
• Limborg, Morten T.; Alberdi, Antton; Kodama, Miyako; Roggenbuck, Michael; Kristiansen, Karsten; Gilbert, Marcus Thomas Pius. (2018) Applied Hologenomics: Feasibility and Potential in Aquaculture. Trends in Biotechnology
  Vitenskapelig oversiktsartikkel/review
• Kistler, Logan; Maezumi, S. Yoshi; de Souza, Jonas Gregorio; Przelomska, Natalia A.S.; Costa, Flaviane Malaquias; Smith, Oliver. (2018) Multiproxy evidence highlights a complex evolutionary legacy of maize in South America. Science
  Vitenskapelig artikkel
• Zhou, Zhemin; Lundstrøm, Inge K. C.; Tran-Dien, Alicia; Duchêne, Sebastián; Alikhan, Nabil-Fareed; Sergeant, Martin J.. (2018) Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. Current Biology
  Vitenskapelig artikkel
• Gopalakrishnan, Shyam; Sinding, Mikkel Holger Strander; Ramos-Madrigal, Jazmín; Niemann, Jonas; Samaniego Castruita, Jose A.; Vieira, Filipe G.. (2018) Interspecific gene flow shaped the evolution of the genus Canis. Current Biology
  Vitenskapelig artikkel
• Sinding, Mikkel Holger Strander; Gopalakrishnan, Shyam; Vieira, Filipe G.; Samaniego, Jose A; Raundrup, Katrine; Heide Jørgensen, Mads Peter. (2018) Population genomics of grey wolves and wolf-like canids in North America . PLoS Genetics
  Vitenskapelig artikkel
• Bro-Jørgensen, Maiken Hemme; Carøe, Christian; Vieira, Filipe G.; Nestor, Sofia; Hallström, Ann; Gregersen, Kristian M.. (2018) Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull. Journal of Archaeological Science
  Vitenskapelig artikkel
• Holt, Carson; Campbell, Michael; Keays, David Anthony; Edelman, Nathaniel; Kapusta, Aurélie; Maclary, Emily. (2018) Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia). G3: Genes, Genomes, Genetics
  Vitenskapelig artikkel
• Bohmann, Kristine; Gopalakrishnan, Shyam; Nielsen, Martin; Bay Nielsen, Luisa dos Santos; Jones, Gareth; Streicker, Daniel G.. (2018) Using DNA metabarcoding for simultaneous inference ofcommon vampire bat diet and population structure. Molecular Ecology Resources
  Vitenskapelig artikkel
• Fietz, Katharina; Hintze, Christian O.R.; Skovrind, Mikkel; Nielsen, Tue Kjærgaard; Limborg, Morten; Krag, Marcus A.. (2018) Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species. Microbiome
  Vitenskapelig artikkel
• Alberdi, Antton; Aizpurua, Ostaizka; Bohmann, Kristine; Gopalakrishnan, Shyam; Lynggaard, Christina; Nielsen, Martin. (2018) Promises and pitfalls of using high-throughput sequencing for diet analysis. Molecular Ecology Resources
  Vitenskapelig oversiktsartikkel/review
• Zepeda Mendoza, M. Lisandra; Roggenbuck, Michael; Manzano Vargas, Karla; Hestbjerg Hansen, Lars; Brunak, Søren; Gilbert, Marcus Thomas Pius. (2018) Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. Acta Veterinaria Scandinavica (AVS)
  Vitenskapelig artikkel
• Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton; Durban, John; Fearnbach, Holly. (2018) Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. Molecular Ecology
  Vitenskapelig artikkel
• Barnett, Ross; Sinding, Mikkel Holger Strander; Vieira, Filipe G.; Mendoza, Marie Lisandra Zepeda; Bonnet, Matthieu; Araldi, Alessandro. (2018) No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon. Conservation Genetics
  Vitenskapelig artikkel
• Alberdi, Antton; Aizpurua, Ostaizka; Gilbert, Marcus Thomas Pius; Bohmann, Kristine. (2018) Scrutinizing key steps for reliable metabarcoding of environmental samples. Methods in Ecology and Evolution
  Vitenskapelig artikkel
• Carøe, Christian; Gopalakrishnan, Shyam; Vinner, Lasse; Mak, Sarah S.T.; Sinding, Mikkel Holger Strander; Samaniego, Jose A. (2018) Singe-tube library preparation for degraded DNA. Methods in Ecology and Evolution
  Vitenskapelig artikkel
• Leathlobhair, Máire Ní; Perri, Angela R.; Irving-Pease, Evan K.; Witt, Kelsey E.; Linderholm, Anna; Haile, James. (2018) The evolutionary history of dogs in the Americas. Science
  Vitenskapelig artikkel
• Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.. (2018) Ancient genomes from Iceland reveal the making of a human population. Science
  Vitenskapelig artikkel
• Teeling, E.; Vernes, S.; Davalos, L.M.; Ray, D.A.; Gilbert, Marcus Thomas Pius; Myers, E. (2018) Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species. Annual Review of Animal Biosciences
  Vitenskapelig artikkel
• Aizpurua, Ostaizka; Budinski, Ivana; Georgiakakis, Panagiotis; Gopalakrishnan, Shyam; Ibañez, Carlos; Mata, Vanessa A.. (2018) Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding. Molecular Ecology
  Vitenskapelig artikkel
• Lewin, Harris A.; Robinson, Gene E.; Kress, W. John; Baker, William J.; Coddington, Jonathan; Crandall, Keith A.. (2018) Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Vitenskapelig oversiktsartikkel/review
• Mak, Sarah Siu Tze; Gopalakrishnan, Shyam; Carøe, Christian; Geng, Chunyu; Liu, Shanlin; Sinding, Mikkel Holger Strander. (2018) Erratum: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing (GigaScience (2017) 6:8 (1-13) DOI: 10.1093/gigascience/gix049). GigaScience
  Errata

2017

• Murray, Gemma G.R.; Soares, André E.R.; Novak, Ben J.; Schaefer, Nathan K.; Cahill, James A.; Baker, Allan J.. (2017) Natural selection shaped the rise and fall of passenger pigeon genomic diversity. Science
  Vitenskapelig artikkel
• Sánchez Barreiro, Fatima; Vieira, Filipe G.; Martin, Michael D.; Haile, James; Gilbert, Marcus Thomas Pius; Wales, Nathan. (2017) Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources
  Vitenskapelig artikkel
• Thomas, Jessica E; Carvalho, Gary R.; Haile, James; Martin, Michael David; Castruita, Jose A. Samaniego; Niemann, Jonas. (2017) An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks. Genes
  Vitenskapelig artikkel
• Seki, Ryohei; Li, Caí; Fang, Qi; Hayashi, Shinichi; Egawa, Shiro; Hu, Jiang. (2017) Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nature Communications
  Vitenskapelig artikkel
• Grealy, Alicia; Phillips, Matthew; Miller, Gifford; Gilbert, Marcus Thomas Pius; Rouillard, Jean-Marie; Lambert, David. (2017) Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular Phylogenetics and Evolution
  Vitenskapelig artikkel
• Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko. (2017) Connecting Earth observation to high-throughput biodiversity data. Nature Ecology and Evolution
  Vitenskapelig oversiktsartikkel/review
• Paijmans, Johanna L. A.; Barnett, Ross; Gilbert, Marcus Thomas Pius; Zepeda-Mendoza, Marie Lisandra; Reumer, Jelle WF; de Vos, John. (2017) Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics. Current Biology
  Vitenskapelig artikkel
• Fortes-Lima, Cesar; Gessain, Antoine; Ruiz-Linares, Andres; Bortolini, Maria; Migot-Nabias, Florence; Bellis, Gil. (2017) Genome-wide ancestry and demographic history of African-descendant Maroon communities from French Guiana and Suriname. American Journal of Human Genetics
  Vitenskapelig artikkel
• Gilbert, Marcus Thomas Pius. (2017) Documenting DNA in the dust. Molecular Ecology
  Short communication
• Mak, Sarah S.T.; Gopalakrishnan, Shyam; Carøe, Christian; Geng, Chunyu; Liu, Shanlin; Sinding, Mikkel Holger Strander. (2017) Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. GigaScience
  Vitenskapelig artikkel
• Salleh, Faezah Mohd; Ramos-Madrigal, Jazmín; Peñaloza, Fernando; Liu, Shanlin; Sinding, Mikkel Holger Strander; Patel, Riddhi P.. (2017) An expanded mammal mitogenome dataset from Southeast asia. GigaScience
  Vitenskapelig artikkel
• Liu, Yan-Hu; Wang, Lu; Xu, Tao; Guo, Xiaomin; Li, Yang; Yin, Ting-Ting. (2017) Whole-genome sequencing of African dogs provides insights into adaptations against tropical parasites. Molecular Biology and Evolution (MBE)
  Vitenskapelig artikkel
• Diez-del-Molino, DAvid; Sánchez-Barreiro, Fatima; Barnes, Ian; Gilbert, Marcus Thomas Pius; Dalén, Love. (2017) Quantifying temporal genomic erosion in endangered species. Trends in Ecology & Evolution
  Vitenskapelig artikkel
• Sandoval-Velasco, Marcela; Lundstrøm, Inge K. C.; Wales, Nathan; Ávila-Arcos, María C; Schroeder, Hannes; Gilbert, Marcus Thomas Pius. (2017) Relative performance of two DNA extraction and library preparation methods on archaeological human teeth samples. Science and Technology of Archaeological Research
  Vitenskapelig artikkel
• Tanner, Alastair R; Fuchs, Dirk; Winkelmann, Inger E; Gilbert, Marcus Thomas Pius; Pankey, M Sabrina; Ribeiro, Angela. (2017) Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic marine revolution. Proceedings of the Royal Society of London. Biological Sciences
  Vitenskapelig artikkel
• Gopalakrishnan, Shyam; Samaniego Castruita, José Alfredo; Sinding, Mikkel Holger Strander; Kuderna, Lukas FK; Räikkönen, Jannikke; Petersen, Bent. (2017) The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. BMC Genomics
  Vitenskapelig artikkel
• Sinding, Mikkel Holger Strander; Gilbert, Marcus Thomas Pius. (2017) Correction: The draft genome of extinct European aurochs and its implications for de-extinction(Open Quaternary, 2,7, 10.5334/oq.25). Open Quaternary
  Errata

2016

• Alberdi, Antton; Aizpurua, Ostaizka; Bohmann, Kristine; Zepeda-Mendoza, Marie Lisandra; Gilbert, Marcus Thomas Pius. (2016) Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?. Trends in Ecology & Evolution
  Vitenskapelig oversiktsartikkel/review
• Richmond, Douglas J.; Sinding, Mikkel Holger Strander; Gilbert, Marcus Thomas Pius. (2016) The potential and pitfalls of de-extinction. Zoologica Scripta
  Vitenskapelig oversiktsartikkel/review
• Wales, Nathan; Ramos Madrigal, Jazmín; Cappellini, Enrico; Carmona Baez, Aldo; Samaniego Castruita, José Alfredo; Romero-Navarro, J. Alberto. (2016) The limits and potential of paleogenomic techniques for reconstructing grapevine domestication. Journal of Archaeological Science
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• Gelabert, Pere; Sandoval-Velasco, Marcela; Olalde, Iñigo; Fregel, Rosa; Rieux, Adrien; Escosa, Raül. (2016) Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
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• Ramos-Madrigal, Jazmín; Smith, Bruce D; Moreno-Mayar, J Víctor; Gopalakrishnan, Shyam; Ross-Ibarra, Jeffrey; Gilbert, Marcus Thomas Pius. (2016) Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication. Current Biology
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• Martin, Michael D; Olsen, Morten T; Samaniego, Jose; Zimmer, Elizabeth A; Gilbert, Marcus Thomas Pius. (2016) The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.). Ecology and Evolution
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• Sinding, Mikkel Holger Strander; Gilbert, Marcus Thomas Pius. (2016) The draft genome of extinct european aurochs and its implications for de-extinction. Open Quaternary
  Vitenskapelig artikkel